Haplotype-aware graph indexes

Siren, J; Garrison, E; Novak, AM; Paten, B; Durbin, R

Siren, J (corresponding author), Univ Calif Santa Cruz, UC Santa Cruz Genom Inst, Santa Cruz, CA 95064 USA.; Siren, J (corresponding author), Wellcome Sanger Inst, Wellcome Genome Campus, Hinxton CB10 1SA, England.

BIOINFORMATICS, 2020; 36 (2): 400

Abstract

Motivation: The variation graph toolkit (VG) represents genetic variation as a graph. Although each path in the graph is a potential haplotype, most p......

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